Transcript: MYOSLID:15

Basic information

LNCipedia transcript ID: MYOSLID:15 
HGNC Gene Symbol: MYOSLID    
HGNC Full Gene Name: myocardin-induced smooth muscle lncRNA, inducer of differentiation
Ensembl Gene ID: ENSG00000229647
Ensembl Transcript ID: ENST00000440326
Location (hg38): chr2:207239650-207245588
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 806 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003087; ENST00000440326; ENST00000440326.1; AC007879.7-001; OTTHUMT00000337056.1; NONHSAT147139
Alternative gene names: XLOC_001826; linc-CREB1-1; ENSG00000229647; AC007879.7; ENSG00000229647.1; OTTHUMG00000154787.1; MYOSLID


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.3293 non-coding 
CPAT coding probability 12.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYOSLID:15 no no no no

Available literature

  1. Zhao (2016), MYOSLID Is a Novel Serum Response Factor-Dependent Long Noncoding RNA That Amplifies the Vascular Smooth Muscle Differentiation Program., Arterioscler. Thromb. Vasc. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPO-5:1
3.1 lnc-CPO-5:1
4.0 lnc-CPO-5:1
4.1 lnc-CPO-5:1
5.0 lnc-CPO-5:1
5.1 MYOSLID:7
5.2 MYOSLID:15