Transcript: NALT1:5

Basic information

LNCipedia transcript ID: NALT1:5 
LNCipedia gene ID: NALT1
RefSeq ID: NR_121577
Location (hg38): chr9:136547842-136549744
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121577; NR_121577.1
Alternative gene names: TCONS_l2_00029132; NALT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -147.7002 non-coding 
CPAT coding probability 28.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NALT1:5 no no no no

Available literature

  1. Wang (2015), LncRNA NALT interaction with NOTCH1 promoted cell proliferation in pediatric T cell acute lymphoblastic leukemia., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf163-2:7
4.0 NALT1:5
4.1 NALT1:5
5.0 NALT1:5
5.1 NALT1:5
5.2 NALT1:5