Transcript: NAV2-IT1:1

Basic information

LNCipedia transcript ID: NAV2-IT1:1 
HGNC Gene Symbol: NAV2-IT1    
HGNC Full Gene Name: NAV2 intronic transcript 1
Ensembl Gene ID: ENSG00000255270
Ensembl Transcript ID: ENST00000528204
Location (hg38): chr11:19380484-19385014
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 506 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528204.1; NAV2-IT1-001; OTTHUMT00000387835.1; NONHSAT018337
Alternative gene names: ENSG00000255270.1; NAV2-IT1; OTTHUMG00000166103.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.1395 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NAV2-IT1:1 yes no no no

Available literature

  1. Yu (2015), Glucocorticoids Significantly Influence the Transcriptome of Bone Microvascular Endothelial Cells of Human Femoral Head., Chin. Med. J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZDHHC13-3:1
4.0 NAV2-IT1:1
4.1 NAV2-IT1:1
5.0 NAV2-IT1:1
5.1 NAV2-IT1:1
5.2 NAV2-IT1:1