Transcript: NBAT1:2

Basic information

LNCipedia transcript ID: NBAT1:2 
HGNC Gene Symbol: NBAT1    
HGNC Full Gene Name: neuroblastoma associated transcript 1
Ensembl Gene ID: ENSG00000260455
Ensembl Transcript ID: ENST00000566912
Location (hg38): chr6:22134957-22147193
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1940 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511541; ENST00000566912.1; RP1-67M12.2-001; OTTHUMT00000431254.1
Alternative gene names: ENSG00000250785; ENSG00000260455.1; RP1-67M12.2; OTTHUMG00000175902.1; CASC14; NBAT1; NBAT-1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.1247 non-coding 
CPAT coding probability 29.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NBAT1:2 no no no no

Available literature

  1. Liu (2018), Effect of downregulated lncRNA NBAT1 on the biological behavior of glioblastoma cells., Eur Rev Med Pharmacol Sci
  2. Hu (2015), NBAT1 suppresses breast cancer metastasis by regulating DKK1 via PRC2., Oncotarget
  3. Pandey (2015), Fighting Neuroblastomas with NBAT1., Oncoscience
  4. Xue (2015), Decreased expression of long non-coding RNA NBAT-1 is associated with poor prognosis in patients with clear cell renal cell carcinoma., Int J Clin Exp Pathol
  5. Pandey (2014), The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation., Cancer Cell

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRL-1:1
3.1 lnc-PRL-1:1
4.0 NBAT1:2
4.1 NBAT1:2
5.0 NBAT1:2
5.1 NBAT1:2
5.2 NBAT1:2