Transcript: NCAM1-AS1:4

Basic information

LNCipedia transcript ID: NCAM1-AS1:4 
HGNC Gene Symbol: NCAM1-AS1    
HGNC Full Gene Name: NCAM1 antisense RNA1
Ensembl Gene ID: ENSG00000227487
Ensembl Transcript ID: ENST00000533638
Location (hg38): chr11:113269532-113273806
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 618 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533638.1; RP11-839D17.2-002; OTTHUMT00000395471.1
Alternative gene names: ENSG00000227487.3; RP11-839D17.2; OTTHUMG00000167663.1; NCAM1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 242.4666 coding 
CPAT coding probability 26.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NCAM1-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DRD2-2:2
4.0 NCAM1-AS1:4
4.1 NCAM1-AS1:4
5.0 NCAM1-AS1:4
5.1 NCAM1-AS1:4
5.2 NCAM1-AS1:4