Transcript: NCK1-DT:22

Basic information

LNCipedia transcript ID: NCK1-DT:22 
LNCipedia gene ID: NCK1-DT
RefSeq ID: NR_110175
Location (hg38): chr3:136841976-136862063
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1056 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110175; NR_110175.1
Alternative gene names: SLC35G2-AS1; NCK1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.9213 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NCK1-DT:22 no no no no

Available literature

  1. Li (2018), LncRNA NCK1-AS1 promotes proliferation and induces cell cycle progression by crosstalk NCK1-AS1/miR-6857/CDK1 pathway., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STAG1-1:5
4.0 NCK1-AS1:3
4.1 NCK1-AS1:3
5.0 NCK1-AS1:3
5.1 NCK1-DT:4
5.2 NCK1-DT:22