Transcript: NCOA7-AS1:1

Basic information

LNCipedia transcript ID: NCOA7-AS1:1 
HGNC Gene Symbol: NCOA7-AS1    
HGNC Full Gene Name: NCOA7 antisense RNA 1
Ensembl Gene ID: ENSG00000232131
Ensembl Transcript ID: ENST00000429007
Location (hg38): chr6:125797856-125818858
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 501 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429007.1; RP1-293L8.5-001; OTTHUMT00000042073.1; NONHSAT114810
Alternative gene names: ENSG00000232131.1; RP1-293L8.5; OTTHUMG00000015510.1; NCOA7-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -365.2698 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NCOA7-AS1:1 no no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDDC2-6:1
4.0 NCOA7-AS1:1
4.1 NCOA7-AS1:1
5.0 NCOA7-AS1:1
5.1 NCOA7-AS1:1
5.2 NCOA7-AS1:1