Transcript: NCRUPAR:2

Basic information

LNCipedia transcript ID: NCRUPAR:2 
LNCipedia gene ID: NCRUPAR
Location (hg38): chr5:76711938-76712861
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 924 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT102246
Alternative gene names: ncR-uPAR; ncRuPAR; NCRNA00193


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.0479 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NCRUPAR:2 no no no no

Available literature

  1. Carter (2015), Circulating long noncoding RNA GAS5 levels are correlated to prevalence of type 2 diabetes mellitus., BBA Clin
  2. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  3. Kraus (2015), Identification of Stably Expressed lncRNAs as Valid Endogenous Controls for Profiling of Human Glioma., J Cancer
  4. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  5. Liu (2014), ncRuPAR inhibits gastric cancer progression by down-regulating protease-activated receptor-1., Tumour Biol.
  6. Yan (2014), Downregulation of a long noncoding RNA-ncRuPAR contributes to tumor inhibition in colorectal cancer., Tumour Biol.
  7. Madamanchi (2002), A noncoding RNA regulates human protease-activated receptor-1 gene during embryogenesis., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-F2R-1:2
4.0 NCRUPAR:2
4.1 NCRUPAR:2
5.0 NCRUPAR:2
5.1 NCRUPAR:2
5.2 NCRUPAR:2