Transcript: NEGR1-IT1:1

Basic information

LNCipedia transcript ID: NEGR1-IT1:1 
HGNC Gene Symbol: NEGR1-IT1    
HGNC Full Gene Name: NEGR1 intronic transcript 1
Ensembl Gene ID: ENSG00000228853
Ensembl Transcript ID: ENST00000453121
RefSeq ID: NR_046218
Location (hg38): chr1:71794232-71837012
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 534 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000453121.1; NEGR1-IT1-001; OTTHUMT00000026852.1; NONHSAT003909; NR_046218; NR_046218.1
Alternative gene names: ENSG00000228853.1; NEGR1-IT1; OTTHUMG00000009732.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.3788 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NEGR1-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZRANB2-1:1
4.0 NEGR1-IT1:1
4.1 NEGR1-IT1:1
5.0 NEGR1-IT1:1
5.1 NEGR1-IT1:1
5.2 NEGR1-IT1:1