Transcript: NEXN-AS1:3

Basic information

LNCipedia transcript ID: NEXN-AS1:3 
LNCipedia gene ID: NEXN-AS1
Location (hg38): chr1:77880770-77889258
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 8399 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235927.2|ENCT00000027631.1
Alternative gene names: FLJ90637


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.0754 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NEXN-AS1:3 no no no no

Available literature

  1. Yuan (2016), A Novel Genetic Variant in Long Non-coding RNA Gene NEXN-AS1 is Associated with Risk of Lung Cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 NEXN-AS1:3
5.0 NEXN-AS1:3
5.1 NEXN-AS1:3
5.2 NEXN-AS1:3