Transcript: NFIA-AS1:10

Basic information

LNCipedia transcript ID: NFIA-AS1:10 
LNCipedia gene ID: NFIA-AS1
Location (hg38): chr1:61248945-61253503
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 377 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237853.2|ENST00000442027.1
Alternative gene names: RP5-833A20.1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -173.3493 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NFIA-AS1:10 yes no no no

Available literature

  1. Kang (2016), Long non-coding RNA RP5-833A20.1 inhibits proliferation, metastasis and cell cycle progression by suppressing the expression of NFIA in U251 cells., Mol Med Rep
  2. Holdt (2015), Long noncoding RNA-MicroRNA pathway controlling nuclear factor IA, a novel atherosclerosis modifier gene., Arterioscler. Thromb. Vasc. Biol.
  3. Hu (2015), RP5-833A20.1/miR-382-5p/NFIA-dependent signal transduction pathway contributes to the regulation of cholesterol homeostasis and inflammatory reaction., Arterioscler. Thromb. Vasc. Biol.
  4. Hu (2014), Genome-wide profiling to analyze the effects of Ox-LDL induced THP-1 macrophage-derived foam cells on gene expression., Genom Data

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 NFIA-AS1:10
5.0 NFIA-AS1:10
5.1 NFIA-AS1:10
5.2 NFIA-AS1:10