Transcript: NFYC-AS1:7

Basic information

LNCipedia transcript ID: NFYC-AS1:7 
LNCipedia gene ID: NFYC-AS1
Ensembl Gene ID: ENSG00000237899
Ensembl Transcript ID: ENST00000440100
Location (hg38): chr1:40669089-40687588
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 471 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440100; ENST00000440100.1; RP4-739H11.3-001; OTTHUMT00000019595.1; NONHSAT002656
Alternative gene names: ENSG00000237899; RP4-739H11.3; ENSG00000237899.1; OTTHUMG00000007457.1; 0808y08y; AL031289.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.1255 non-coding 
CPAT coding probability 25.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NFYC-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RIMS3-1:1
3.1 lnc-RIMS3-1:1
4.0 lnc-RIMS3-1:1
4.1 NFYC-AS1:7
5.0 NFYC-AS1:7
5.1 NFYC-AS1:7
5.2 NFYC-AS1:7