Transcript: NGF-AS1:7

Basic information

LNCipedia transcript ID: NGF-AS1:7 
LNCipedia gene ID: NGF-AS1
Location (hg38): chr1:115283031-115368072
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2613 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228035.1|ENST00000425449.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -136.102 non-coding 
CPAT coding probability 5.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NGF-AS1:7 no no no no

Available literature

  1. Hirata (2018), Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TSHB-3:4
5.0 lnc-TSHB-3:4
5.1 NGF-AS1:3
5.2 NGF-AS1:7