Transcript: NGF-AS1:8

Basic information

LNCipedia transcript ID: NGF-AS1:8 
HGNC Gene Symbol: NGF-AS1    
HGNC Full Gene Name: NGF antisense RNA 1
Ensembl Gene ID: ENSG00000228035
Ensembl Transcript ID: ENST00000425449
Location (hg38): chr1:115283034-115368072
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2610 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425449.1; RP4-663N10.1-001; OTTHUMT00000033101.1
Alternative gene names: ENSG00000228035.1; RP4-663N10.1; OTTHUMG00000011974.1; AL512638.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.102 non-coding 
CPAT coding probability 10.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NGF-AS1:8 no no no no

Available literature

  1. Hirata (2018), Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSHB-3:1
4.0 lnc-TSHB-3:1
4.1 lnc-TSHB-3:1
5.0 lnc-TSHB-3:1
5.1 NGF-AS1:4
5.2 NGF-AS1:8