Transcript: NIFK-AS1:10

Basic information

LNCipedia transcript ID: NIFK-AS1:10 
HGNC Gene Symbol: NIFK-AS1    
HGNC Full Gene Name: NIFK antisense RNA 1
Ensembl Gene ID: ENSG00000236859
Ensembl Transcript ID: ENST00000439321
Location (hg38): chr2:121649983-121651538
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1273 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439321; ENST00000439321.1; AC018737.1-003; OTTHUMT00000330779.1; NONHSAT074047
Alternative gene names: ENSG00000236859; AC018737.1; ENSG00000236859.1; OTTHUMG00000153332.2; ENSG00000236859.2; NIFK-AS1; ENSG00000236859.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7296 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIFK-AS1:10 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSN-2:4
3.1 lnc-TSN-2:4
4.0 NIFK-AS1:10
4.1 NIFK-AS1:10
5.0 NIFK-AS1:10
5.1 NIFK-AS1:10
5.2 NIFK-AS1:10