Transcript: NIFK-AS1:13

Basic information

LNCipedia transcript ID: NIFK-AS1:13 
LNCipedia gene ID: NIFK-AS1
Location (hg38): chr2:121650082-121651164
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 997 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000447668; ENST00000447668.1; AC018737.1-002; OTTHUMT00000330778.1
Alternative gene names: ENSG00000236859; AC018737.1; ENSG00000236859.1; OTTHUMG00000153332.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7296 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIFK-AS1:13 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSN-2:6
3.1 lnc-TSN-2:6
4.0 NIFK-AS1:13
4.1 NIFK-AS1:13
5.0 NIFK-AS1:13
5.1 NIFK-AS1:13
5.2 NIFK-AS1:13