Transcript: NIFK-AS1:19

Basic information

LNCipedia transcript ID: NIFK-AS1:19 
LNCipedia gene ID: NIFK-AS1
Location (hg38): chr2:121649648-121655196
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5160 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236859.2|HBMT00000776267.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.7296 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIFK-AS1:19 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 NIFK-AS1:19
5.0 NIFK-AS1:19
5.1 NIFK-AS1:19
5.2 NIFK-AS1:19