Transcript: NIFK-AS1:2

Basic information

LNCipedia transcript ID: NIFK-AS1:2 
LNCipedia gene ID: NIFK-AS1
Location (hg38): chr2:121649650-121650681
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000414554; TCONS_00002992; ENST00000414554.1; AC018737.1-004; OTTHUMT00000330780.1; NONHSAT074041
Alternative gene names: ENSG00000236859; XLOC_001646; linc-TSN-1; AC018737.1; ENSG00000236859.1; OTTHUMG00000153332.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7296 non-coding 
CPAT coding probability 4.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIFK-AS1:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSN-2:1
3.1 lnc-TSN-2:1
4.0 NIFK-AS1:2
4.1 NIFK-AS1:2
5.0 NIFK-AS1:2
5.1 NIFK-AS1:2
5.2 NIFK-AS1:2