Transcript: NIFK-AS1:3

Basic information

LNCipedia transcript ID: NIFK-AS1:3 
HGNC Gene Symbol: NIFK-AS1    
HGNC Full Gene Name: NIFK antisense RNA 1
Ensembl Gene ID: ENSG00000236859
Ensembl Transcript ID: ENST00000414554
Location (hg38): chr2:121649650-121651535
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1411 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414554.2; ENST00000414554.6
Alternative gene names: ENSG00000236859.2; NIFK-AS1; ENSG00000236859.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7296 non-coding 
CPAT coding probability 4.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIFK-AS1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSN-2:9
4.0 NIFK-AS1:3
4.1 NIFK-AS1:3
5.0 NIFK-AS1:3
5.1 NIFK-AS1:3
5.2 NIFK-AS1:3