Transcript: NIPBL-DT:14

Basic information

LNCipedia transcript ID: NIPBL-DT:14 
LNCipedia gene ID: NIPBL-DT
Location (hg38): chr5:36864425-36876657
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2589 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000501714; TCONS_00009639; ENST00000501714.1; CTD-2653M23.2-001; OTTHUMT00000366970.1; NONHSAT101044
Alternative gene names: ENSG00000248044; XLOC_004784; linc-RANBP3L-4; CTD-2653M23.2; ENSG00000248044.1; OTTHUMG00000162033.1; NIPBL-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.1377 non-coding 
CPAT coding probability 8.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIPBL-DT:14 no no no no

Available literature

  1. Zuin (2017), Regulation of the cohesin-loading factor NIPBL: Role of the lncRNA NIPBL-AS1 and identification of a distal enhancer element., PLoS Genet.
  2. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf42-2:1
3.1 lnc-C5orf42-2:1
4.0 NIPBL-AS1:4
4.1 NIPBL-AS1:4
5.0 NIPBL-AS1:4
5.1 NIPBL-DT:5
5.2 NIPBL-DT:14