Transcript: NKAIN3-IT1:7

Basic information

LNCipedia transcript ID: NKAIN3-IT1:7 
HGNC Gene Symbol: NKAIN3-IT1    
HGNC Full Gene Name: NKAIN3 intronic transcript
Ensembl Gene ID: ENSG00000274956
Ensembl Transcript ID: ENST00000622794
Location (hg38): chr8:62977861-62981750
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3890 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622794.1
Alternative gene names: ENSG00000274956.2; UG0898H09; AC120042.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.1302 non-coding 
CPAT coding probability 39.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NKAIN3-IT1:7 yes no no no

Available literature

  1. Zhang (2015), Long Non-Coding RNAs Dysregulation and Function in Glioblastoma Stem Cells., Noncoding RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-32K4.2.1-6:3
4.1 lnc-RP11-32K4.2.1-6:3
5.0 lnc-RP11-32K4.2.1-6:3
5.1 NKAIN3-IT1:3
5.2 NKAIN3-IT1:7