Transcript: NLGN1-AS1:1

Basic information

LNCipedia transcript ID: NLGN1-AS1:1 
HGNC Gene Symbol: NLGN1-AS1    
HGNC Full Gene Name: NLGN1 antisense RNA 1
Ensembl Gene ID: ENSG00000228213
Ensembl Transcript ID: ENST00000423873
RefSeq ID: NR_046664
Location (hg38): chr3:173910498-173920796
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 815 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000423873.1; NLGN1-AS1-001; OTTHUMT00000347116.1; NONHSAT093275; ENST00000423873.5; NR_046664.1
Alternative gene names: ENSG00000228213.1; NLGN1-AS1; OTTHUMG00000157016.1; ENSG00000228213.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -240.996 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NLGN1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA16-1:1
4.0 NLGN1-AS1:1
4.1 NLGN1-AS1:1
5.0 NLGN1-AS1:1
5.1 NLGN1-AS1:1
5.2 NLGN1-AS1:1