Transcript: NLGN4Y-AS1:1

Basic information

LNCipedia transcript ID: NLGN4Y-AS1:1 
HGNC Gene Symbol: NLGN4Y-AS1    
HGNC Full Gene Name: NLGN4Y antisense RNA 1
Ensembl Gene ID: ENSG00000228787
Ensembl Transcript ID: ENST00000434164
RefSeq ID: NR_046504
Location (hg38): chrY:14793642-14804033
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 532 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000434164.1; NLGN4Y-AS1-001; OTTHUMT00000130083.1; NONHSAT139520; NR_046504; NR_046504.1
Alternative gene names: ENSG00000228787.1; NLGN4Y-AS1; OTTHUMG00000058879.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.0178 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NLGN4Y-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VCY1B-2:1
4.0 NLGN4Y-AS1:1
4.1 NLGN4Y-AS1:1
5.0 NLGN4Y-AS1:1
5.1 NLGN4Y-AS1:1
5.2 NLGN4Y-AS1:1