Transcript: NNT-AS1:9

Basic information

LNCipedia transcript ID: NNT-AS1:9 
HGNC Gene Symbol: NNT-AS1    
HGNC Full Gene Name: NNT antisense RNA 1
Ensembl Gene ID: ENSG00000248092
Ensembl Transcript ID: ENST00000503484
Location (hg38): chr5:43578337-43602937
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 503 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503484; ENST00000503484.1; RP11-159F24.1-001; OTTHUMT00000367956.1; NONHSAT101323; ENST00000503484.5
Alternative gene names: ENSG00000248092; RP11-159F24.1; ENSG00000248092.2; OTTHUMG00000162220.1; ENSG00000248092.3; NNT-AS1; ENSG00000248092.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 71.8298 coding 
CPAT coding probability 3.23% non-coding 
Bazzini small ORFs 1 coding 
seqAAMSSLGSHQNKETGLKTLIPESILPHIQNEIHAQRCQEESRQTGLSRK
orfFrame7.25289066
covF1Prop0.155555556

In stringent set: no

Locus conservation

Locus conservation?
NNT-AS1:9 no no no no

Available literature

  1. Hua (2017), Highly expressed long non-coding RNA NNT-AS1 promotes cell proliferation and invasion through Wnt/β-catenin signaling pathway in cervical cancer., Biomed. Pharmacother.
  2. Wang (2017), Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAIP1-1:5
3.1 lnc-PAIP1-1:5
4.0 NNT-AS1:9
4.1 NNT-AS1:9
5.0 NNT-AS1:9
5.1 NNT-AS1:9
5.2 NNT-AS1:9