Transcript: NNT-AS1:9

Basic information

LNCipedia transcript ID: NNT-AS1:9 ?
HGNC Gene Symbol: NNT-AS1    ?
HGNC Full Gene Name: NNT antisense RNA 1
Location (hg19): chr5:43578439-43603039
Strand: -
Class: antisense
Transcript size: 503 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000503484; ENST00000503484.1; RP11-159F24.1-001; OTTHUMT00000367956.1; NONHSAT101323; ENST00000503484.5
Alternative gene names: ENSG00000248092; RP11-159F24.1; ENSG00000248092.2; OTTHUMG00000162220.1; ENSG00000248092.3; NNT-AS1; ENSG00000248092.7;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 1 coding ?
Highest peak:25
PhyloCSF score 71.8298 coding ?
CPAT coding probability 3.23% non-coding ?
Bazzini small ORFs 1 coding ?
covF1Prop0.155555556
seqAAMSSLGSHQNKETGLKTLIPESILPHIQNEIHAQRCQEESRQTGLSRK
orfFrame7.25289066
In stringent set: no

Locus conservation

Locus conservation?
NNT-AS1:9 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -178.5
Randfold P-value: 0.916

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-4642 76.93
hsa-miR-4268 75.22
hsa-miR-3167 67.60
hsa-miR-876-5p 65.60
hsa-miR-1182 55.46
hsa-miR-5706 54.48
hsa-miR-670 51.67

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-PAIP1-1:5
4.0 NNT-AS1:9
3.1 lnc-PAIP1-1:5