Transcript: NOP14-AS1:3

Basic information

LNCipedia transcript ID: NOP14-AS1:3 
HGNC Gene Symbol: NOP14-AS1    
HGNC Full Gene Name: NOP14 antisense RNA 1
Ensembl Gene ID: ENSG00000249673
Ensembl Transcript ID: ENST00000507999
Location (hg38): chr4:2934940-2940504
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1360 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507999; ENST00000507999.1; NOP14-AS1-006; OTTHUMT00000358164.1; NONHSAT094827; ENST00000507999.5
Alternative gene names: ENSG00000249673; RP11-520M5.5; ENSG00000249673.1; NOP14-AS1; OTTHUMG00000160136.2; ENSG00000249673.2; ENSG00000249673.6; RES4-24


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8625 non-coding 
CPAT coding probability 33.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NOP14-AS1:3 yes no no no

Available literature

  1. Hadano (1998), The primary structure and genomic organization of five novel transcripts located close to the Huntington's disease gene on human chromosome 4p16.3., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADD1-1:2
3.1 lnc-ADD1-1:2
4.0 NOP14-AS1:3
4.1 NOP14-AS1:3
5.0 NOP14-AS1:3
5.1 NOP14-AS1:3
5.2 NOP14-AS1:3