Transcript: NPSR1-AS1:12

Basic information

LNCipedia transcript ID: NPSR1-AS1:12 
LNCipedia gene ID: NPSR1-AS1
Location (hg38): chr7:34350422-34758272
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 949 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000537560; ENST00000537560.1; NPSR1-AS1-203
Alternative gene names: ENSG00000197085; AC005688.1; ENSG00000197085.6; NPSR1-AS1; OTTHUMG00000153007.3; ENSG00000197085.7; AAA1; IMAGE:4827585


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.558 non-coding 
CPAT coding probability 4.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NPSR1-AS1:12 yes no no no

Available literature

  1. Laitinen (2004), Characterization of a common susceptibility locus for asthma-related traits., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC005493.1-1:9
3.1 lnc-AC005493.1-1:11
4.0 NPSR1-AS1:12
4.1 NPSR1-AS1:12
5.0 NPSR1-AS1:12
5.1 NPSR1-AS1:12
5.2 NPSR1-AS1:12