Transcript: NPSR1-AS1:2

Basic information

LNCipedia transcript ID: NPSR1-AS1:2 
HGNC Gene Symbol: NPSR1-AS1    
HGNC Full Gene Name: NPSR1 antisense RNA 1
Ensembl Gene ID: ENSG00000197085
Ensembl Transcript ID: ENST00000431669
Location (hg38): chr7:34643227-34871582
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 369 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431669; ENST00000431669.1; NPSR1-AS1-006; OTTHUMT00000329043.1; NONHSAT120051; ENST00000431669.5
Alternative gene names: ENSG00000197085; AC005688.1; ENSG00000197085.6; NPSR1-AS1; OTTHUMG00000153007.3; ENSG00000197085.7; ENSG00000197085.11; AAA1; IMAGE:4827585


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.3751 non-coding 
CPAT coding probability 9.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NPSR1-AS1:2 yes no no no

Available literature

  1. Laitinen (2004), Characterization of a common susceptibility locus for asthma-related traits., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC005493.1-1:2
3.1 lnc-AC005493.1-1:2
4.0 NPSR1-AS1:2
4.1 NPSR1-AS1:2
5.0 NPSR1-AS1:2
5.1 NPSR1-AS1:2
5.2 NPSR1-AS1:2