Transcript: NPSR1-AS1:7

Basic information

LNCipedia transcript ID: NPSR1-AS1:7 
HGNC Gene Symbol: NPSR1-AS1    
HGNC Full Gene Name: NPSR1 antisense RNA 1
Ensembl Gene ID: ENSG00000197085
Ensembl Transcript ID: ENST00000436945
Location (hg38): chr7:34718862-34834328
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1406 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436945.3; ENST00000436945.4
Alternative gene names: ENSG00000197085.7; NPSR1-AS1; ENSG00000197085.11; AAA1; IMAGE:4827585


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.2183 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NPSR1-AS1:7 yes no no no

Available literature

  1. Laitinen (2004), Characterization of a common susceptibility locus for asthma-related traits., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC005493.1-1:13
4.0 NPSR1-AS1:7
4.1 NPSR1-AS1:7
5.0 NPSR1-AS1:7
5.1 NPSR1-AS1:7
5.2 NPSR1-AS1:7