Transcript: NPTN-IT1:1

Basic information

LNCipedia transcript ID: NPTN-IT1:1 
LNCipedia gene ID: NPTN-IT1
RefSeq ID: NR_103844
Location (hg38): chr15:73566938-73569543
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2606 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT047148; NR_103844; NR_103844.1
Alternative gene names: lncRNA-LET; NPTN-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.9701 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NPTN-IT1:1 yes no no no

Available literature

  1. Yang (2013), Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C15orf59-5:1
4.0 NPTN-IT1:1
4.1 NPTN-IT1:1
5.0 NPTN-IT1:1
5.1 NPTN-IT1:1
5.2 NPTN-IT1:1