Transcript: NRAV:3

Basic information

LNCipedia transcript ID: NRAV:3 
LNCipedia gene ID: NRAV
RefSeq ID: NR_038854
Location (hg38): chr12:120490338-120495946
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1897 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038854; NR_038854.1
Alternative gene names: ; NRAV


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.4228 non-coding 
CPAT coding probability 7.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRAV:3 no no no no

Available literature

  1. Ouyang (2014), NRAV, a long noncoding RNA, modulates antiviral responses through suppression of interferon-stimulated gene transcription., Cell Host Microbe
  2. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COQ5-1:4
4.0 NRAV:3
4.1 NRAV:3
5.0 NRAV:3
5.1 NRAV:3
5.2 NRAV:3