Transcript: NRAV:4

Basic information

LNCipedia transcript ID: NRAV:4 
HGNC Gene Symbol: NRAV    
HGNC Full Gene Name: negative regulator of antiviral response
Ensembl Gene ID: ENSG00000248008
Ensembl Transcript ID: ENST00000500741
Location (hg38): chr12:120490328-120495940
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1901 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500741; ENST00000500741.2
Alternative gene names: ENSG00000248008; ENSG00000248008.2; DYNLL1-AS1; NRAV;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.4228 non-coding 
CPAT coding probability 7.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRAV:4 no no no no

Available literature

  1. Ouyang (2014), NRAV, a long noncoding RNA, modulates antiviral responses through suppression of interferon-stimulated gene transcription., Cell Host Microbe
  2. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COQ5-1:1
3.1 lnc-COQ5-1:2
4.0 NRAV:4
4.1 NRAV:4
5.0 NRAV:4
5.1 NRAV:4
5.2 NRAV:4