Transcript: NRAV:5

Basic information

LNCipedia transcript ID: NRAV:5 
LNCipedia gene ID: NRAV
Location (hg38): chr12:120490328-120495940
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1901 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000500741; ENST00000500741.2; RP11-18C24.6-002; OTTHUMT00000403766.1
Alternative gene names: ENSG00000248008; RP11-18C24.6; ENSG00000248008.2; OTTHUMG00000169374.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.4228 non-coding 
CPAT coding probability 7.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRAV:5 no no no no

Available literature

  1. Ouyang (2014), NRAV, a long noncoding RNA, modulates antiviral responses through suppression of interferon-stimulated gene transcription., Cell Host Microbe
  2. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COQ5-1:2
3.1 lnc-COQ5-1:1
4.0 NRAV:5
4.1 NRAV:5
5.0 NRAV:5
5.1 NRAV:5
5.2 NRAV:5