Transcript: NRG3-AS1:7

Basic information

LNCipedia transcript ID: NRG3-AS1:7 
LNCipedia gene ID: NRG3-AS1
Ensembl Gene ID: ENSG00000229458
Ensembl Transcript ID: ENST00000440589
Location (hg38): chr10:82224213-82229179
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 527 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440589.2; RP11-202D18.2-001; OTTHUMT00000049102.2; NONHSAT015284
Alternative gene names: ENSG00000229458.2; RP11-202D18.2; OTTHUMG00000018625.2; Em:AC010157.1; AC010157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.5028 non-coding 
CPAT coding probability 7.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRG3-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DYDC1-4:4
4.0 NRG3-AS1:7
4.1 NRG3-AS1:7
5.0 NRG3-AS1:7
5.1 NRG3-AS1:7
5.2 NRG3-AS1:7