Transcript: NRIR:2

Basic information

LNCipedia transcript ID: NRIR:2 
LNCipedia gene ID: NRIR
RefSeq ID: NR_126359
Location (hg38): chr2:6828554-6840464
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 832 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126359; NR_126359.1
Alternative gene names: lncRNA-CMPK2; NRIR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.0095 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRIR:2 no no no no

Available literature

  1. Kambara (2014), Negative regulation of the interferon response by an interferon-induced long non-coding RNA., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CMPK2-1:7
4.0 NRIR:2
4.1 NRIR:2
5.0 NRIR:2
5.1 NRIR:2
5.2 NRIR:2