Transcript: NRIR:5

Basic information

LNCipedia transcript ID: NRIR:5 
HGNC Gene Symbol: NRIR    
HGNC Full Gene Name: negative regulator of interferon response
Ensembl Gene ID: ENSG00000225964
Ensembl Transcript ID: ENST00000366140
Location (hg38): chr2:6828514-6833531
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 799 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003184; ENST00000366140.2; AC017076.5-001; OTTHUMT00000323697.1; NONHSAT068917; ENST00000366140.6
Alternative gene names: XLOC_001966; linc-RNASEH1-12; ENSG00000225964.1; AC017076.5; OTTHUMG00000151730.1; ENSG00000225964.5; NRIR; lncRNA-CMPK2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.0095 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRIR:5 no no no no

Available literature

  1. Kambara (2014), Negative regulation of the interferon response by an interferon-induced long non-coding RNA., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-1:1
3.1 lnc-CMPK2-1:2
4.0 NRIR:5
4.1 NRIR:5
5.0 NRIR:5
5.1 NRIR:5
5.2 NRIR:5