Transcript: NRIR:6

Basic information

LNCipedia transcript ID: NRIR:6 
LNCipedia gene ID: NRIR
Location (hg38): chr2:6829727-6833363
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1637 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002qyq_1
Alternative gene names: lncRNA-CMPK2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3026 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRIR:6 no no no no

Available literature

  1. Kambara (2014), Negative regulation of the interferon response by an interferon-induced long non-coding RNA., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CMPK2-1:6
4.0 NRIR:6
4.1 NRIR:6
5.0 NRIR:6
5.1 NRIR:6
5.2 NRIR:6