Transcript: NTRK3-AS1:2

Basic information

LNCipedia transcript ID: NTRK3-AS1:2 
HGNC Gene Symbol: NTRK3-AS1    
HGNC Full Gene Name: NTRK3 antisense RNA 1
Ensembl Gene ID: ENSG00000260305
Ensembl Transcript ID: ENST00000569588
RefSeq ID: NR_038229
Location (hg38): chr15:88252730-88271066
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2663 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506711; ENST00000569588.1; RP11-356B18.2-001; OTTHUMT00000421716.1; NONHSAT048163; NR_038229; NR_038229.1
Alternative gene names: ENSG00000250429; ENSG00000260305.1; RP11-356B18.2; OTTHUMG00000173016.1; NTRK3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.1643 non-coding 
CPAT coding probability 6.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NTRK3-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS11-1:1
3.1 lnc-MRPS11-1:1
4.0 NTRK3-AS1:2
4.1 NTRK3-AS1:2
5.0 NTRK3-AS1:2
5.1 NTRK3-AS1:2
5.2 NTRK3-AS1:2