Transcript: NUP50-DT:29

Basic information

LNCipedia transcript ID: NUP50-DT:29 
LNCipedia gene ID: NUP50-DT
Location (hg38): chr22:45133821-45163857
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1172 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA949:4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -33.2818 non-coding 
CPAT coding probability 23.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NUP50-DT:29 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 NUP50-AS1:1
4.1 NUP50-AS1:1
5.0 NUP50-AS1:1
5.1 NUP50-DT:2
5.2 NUP50-DT:29