Transcript: NUP50-DT:30

Basic information

LNCipedia transcript ID: NUP50-DT:30 
LNCipedia gene ID: NUP50-DT
Location (hg38): chr22:45147991-45163844
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 15854 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT087206
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 71.937 coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NUP50-DT:30 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0930-2:4
4.0 NUP50-AS1:2
4.1 NUP50-AS1:2
5.0 NUP50-AS1:2
5.1 NUP50-DT:3
5.2 NUP50-DT:30