Transcript: NUP50-DT:44

Basic information

LNCipedia transcript ID: NUP50-DT:44 
LNCipedia gene ID: NUP50-DT
RefSeq ID: NR_038956
Location (hg38): chr22:45133758-45163781
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1338 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT087201; NR_038956; NR_038956.1
Alternative gene names: ; NUP50-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 71.937 coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NUP50-DT:44 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0930-2:9
4.0 NUP50-AS1:10
4.1 NUP50-AS1:10
5.0 NUP50-AS1:10
5.1 NUP50-DT:17
5.2 NUP50-DT:44