Transcript: NUP50-DT:49

Basic information

LNCipedia transcript ID: NUP50-DT:49 
HGNC Gene Symbol: NUP50-DT    
HGNC Full Gene Name: NUP50 divergent transcript
Ensembl Gene ID: ENSG00000226328
Ensembl Transcript ID: ENST00000432502
Location (hg38): chr22:45134290-45163659
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 596 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432502; ENST00000432502.1; CTA-217C2.1-002; OTTHUMT00000321992.1; NONHSAT087204
Alternative gene names: ENSG00000226328; CTA-217C2.1; ENSG00000226328.1; OTTHUMG00000151264.1; ENSG00000226328.2; ENSG00000226328.6; NUP50-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 71.937 coding 
CPAT coding probability 3.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NUP50-DT:49 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0930-2:2
3.1 lnc-KIAA0930-2:2
4.0 NUP50-AS1:13
4.1 NUP50-AS1:13
5.0 NUP50-AS1:13
5.1 NUP50-DT:22
5.2 NUP50-DT:49