Transcript: NUP50-DT:50

Basic information

LNCipedia transcript ID: NUP50-DT:50 
LNCipedia gene ID: NUP50-DT
Ensembl Gene ID: ENSG00000273243
Ensembl Transcript ID: ENST00000609432
Location (hg38): chr22:45155539-45156011
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609432.1
Alternative gene names: ENSG00000273243.1; CTA-217C2.2; ; Z82243.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.8248 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NUP50-DT:50 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0930-2:11
4.0 NUP50-AS1:14
4.1 NUP50-AS1:14
5.0 NUP50-AS1:14
5.1 NUP50-DT:23
5.2 NUP50-DT:50