Transcript: NUP50-DT:54

Basic information

LNCipedia transcript ID: NUP50-DT:54 
LNCipedia gene ID: NUP50-DT
Location (hg38): chr22:45139041-45147867
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8827 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226328.2|ENCT00000283609.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.6419 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NUP50-DT:54 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 NUP50-AS1:27
5.0 NUP50-AS1:27
5.1 NUP50-DT:27
5.2 NUP50-DT:54