Transcript: NUP50-DT:55

Basic information

LNCipedia transcript ID: NUP50-DT:55 
LNCipedia gene ID: NUP50-DT
Location (hg38): chr22:45133572-45139173
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1576 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029713; NONHSAT087199
Alternative gene names: XLOC_014394; linc-PHF21B;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4717 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NUP50-DT:55 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0930-2:3
3.1 lnc-KIAA0930-2:3
4.0 NUP50-AS1:18
4.1 NUP50-AS1:18
5.0 NUP50-AS1:18
5.1 NUP50-DT:28
5.2 NUP50-DT:55