Transcript: ODF2-AS1:1

Basic information

LNCipedia transcript ID: ODF2-AS1:1 
HGNC Gene Symbol: ODF2-AS1    
HGNC Full Gene Name: ODF2 antisense RNA 1
Ensembl Gene ID: ENSG00000225951
Ensembl Transcript ID: ENST00000420801
Location (hg38): chr9:128468957-128473012
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 407 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420801.1; RP11-339B21.9-001; OTTHUMT00000054431.1; NONHSAT134957
Alternative gene names: ENSG00000225951.1; RP11-339B21.9; OTTHUMG00000020745.1; ODF2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 354.2967 coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ODF2-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRUB2-3:1
4.0 ODF2-AS1:1
4.1 ODF2-AS1:1
5.0 ODF2-AS1:1
5.1 ODF2-AS1:1
5.2 ODF2-AS1:1