Transcript: OLMALINC:18

Basic information

LNCipedia transcript ID: OLMALINC:18 
HGNC Gene Symbol: OLMALINC    
HGNC Full Gene Name: oligodendrocyte maturation-associated long intergenic non-coding RNA
Ensembl Gene ID: ENSG00000235823
Ensembl Transcript ID: ENST00000454935
Location (hg38): chr10:100373615-100383368
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2551 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454935; ENST00000454935.1; LINC00263-001; OTTHUMT00000049862.1; NONHSAT015970
Alternative gene names: ENSG00000235823; NCRNA00263; ENSG00000235823.1; LINC00263; OTTHUMG00000018909.1; OLMALINC; bA34D15.5; FLJ12974; HI-LNC80; ENSG00000235823.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 24.068 non-coding 
CPAT coding probability 13.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
OLMALINC:18 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science
  2. Liu (2015), Long non-coding RNAs expression profile in HepG2 cells reveals the potential role of long non-coding RNAs in the cholesterol metabolism., Chin. Med. J.
  3. Mills (2015), High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation., Mol Brain
  4. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.
  5. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCD-1:10
3.1 lnc-SCD-1:10
4.0 OLMALINC:18
4.1 OLMALINC:18
5.0 OLMALINC:18
5.1 OLMALINC:18
5.2 OLMALINC:18