Transcript: OVAAL:1

Basic information

LNCipedia transcript ID: OVAAL:1 
LNCipedia gene ID: OVAAL
RefSeq ID: NR_125716
Location (hg38): chr1:180558974-180566518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1491 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000058; NONHSAT008263; NR_125716; NR_125716.1
Alternative gene names: XLOC_000477; linc-XPR1; LINC01131; OVAL; OVAAL

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.9462 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OVAAL:1 no no no no

Available literature

  1. Akrami (2013), Comprehensive analysis of long non-coding RNAs in ovarian cancer reveals global patterns and targeted DNA amplification., PLoS ONE

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XPR1-2:1
3.1 lnc-XPR1-2:1
4.0 OVAAL:1
4.1 OVAAL:1
5.0 OVAAL:1
5.1 OVAAL:1
5.2 OVAAL:1