Transcript: OVAAL:2

Basic information

LNCipedia transcript ID: OVAAL:2 
HGNC Gene Symbol: OVAAL    
HGNC Full Gene Name: ovarian adenocarcinoma amplified long non-coding RNA
Ensembl Gene ID: ENSG00000236719
Ensembl Transcript ID: ENST00000442621
Location (hg38): chr1:180558976-180566518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1489 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442621; ENST00000442621.1; RP11-522D2.1-001; OTTHUMT00000084991.1
Alternative gene names: ENSG00000236719; RP11-522D2.1; ENSG00000236719.2; OTTHUMG00000035112.1; OVAAL; LINC01131; OVAL

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.9462 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OVAAL:2 no no no no

Available literature

  1. Akrami (2013), Comprehensive analysis of long non-coding RNAs in ovarian cancer reveals global patterns and targeted DNA amplification., PLoS ONE

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XPR1-2:2
3.1 lnc-XPR1-2:2
4.0 OVAAL:2
4.1 OVAAL:2
5.0 OVAAL:2
5.1 OVAAL:2
5.2 OVAAL:2