Transcript: PABPC1L2B-AS1:1

Basic information

LNCipedia transcript ID: PABPC1L2B-AS1:1 
LNCipedia gene ID: PABPC1L2B-AS1
Location (hg38): chrX:72998601-73002856
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 954 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00017069; ENST00000416989.1; RP11-493K23.1-001; OTTHUMT00000057220.1
Alternative gene names: XLOC_008184; linc-DMRTC1B-1; ENSG00000226725.1; RP11-493K23.1; OTTHUMG00000021822.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.5585 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PABPC1L2B-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMRTC1-1:1
3.1 lnc-DMRTC1-1:1
4.0 PABPC1L2B-AS1:1
4.1 PABPC1L2B-AS1:1
5.0 PABPC1L2B-AS1:1
5.1 PABPC1L2B-AS1:1
5.2 PABPC1L2B-AS1:1