Transcript: PACERR:1

Basic information

LNCipedia transcript ID: PACERR:1 
HGNC Gene Symbol: PACERR    
HGNC Full Gene Name: PTGS2 antisense NFKB1 complex-mediated expression regulator RNA
Ensembl Gene ID: ENSG00000273129
Ensembl Transcript ID: ENST00000608917
Location (hg38): chr1:186680622-186681446
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 825 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608917.1
Alternative gene names: ENSG00000273129.1; RP5-973M2.2; PACERR; PACER; PTGS2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.9268 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PACERR:1 no no no no

Available literature

  1. Krawczyk (2014), p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes., Elife


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLA2G4A-10:1
4.0 PACERR:1
4.1 PACERR:1
5.0 PACERR:1
5.1 PACERR:1
5.2 PACERR:1